ICLR 2025PastOther
ICLR 2025 Workshop on AI for Nucleic Acids
ICLR 2025 AI4NA
- Submission deadline
- Feb 14, 2025, 11:59 UTCimported from OpenReview — check the website for extensions
- Submission portal
- OpenReview
- Notes
- Topics were auto-suggested and may be imprecise — edits welcome.
Accepted papers (35)
Fetched from OpenReview (v2) on 2026-06-10.
A Comprehensive Library for RNA Structure-Function Modeling
Accelerating Aptamer Discovery using a Transformer Based T5 Model: A Preliminary Study
arowana: a transformer-based training framework for RNA basecalling and modification detection
Bayesian Approximation of RNA Folding Times
Benchmarking Fine-Tuned RNA Language Models for Intronic Branch Point Prediction
Campolina: A Deep Neural Framework for Accurate Segmentation of Nanopore Signals
Character-level Tokenizations as Powerful Inductive Biases for RNA Foundational Models
Crypto-ncRNA: Non-coding RNA (ncRNA) Based Encryption Algorithm
Decision Tree Induction with Dynamic Feature Generation: A Framework for Interpretable DNA Sequence Analysis
Differentiable Folding for Nearest Neighbor Model Optimization
Enhancing DNA Foundation Models to Address Masking Inefficiencies
EvoFlow-RNA: Generating and Representing non-coding RNA with a Language Model
FFPEnet: Somatic variant calling in FFPE tumor samples using deep transfer learning
Flexible Models of Functional Annotations to Variant Effects using Accelerated Linear Algebra
From Mutation to Degradation: Predicting Nonsense-Mediated mRNA Decay with NMDEP
GENATATOR: de novo Gene Annotation With DNA Language Model
Gumbel-Softmax Score and Flow Matching for Discrete Biological Sequence Generation
HARMONY: A Multi-Representation Framework for RNA Property Prediction
HyperGenie: A method for predicting enzymatic gene essentiality using hypergraph neural networks and genome-scale metabolic models
InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference
Long-range gene expression prediction with token alignment of large language model
MoXGATE: Modality-Aware Cross-Attention for Multi-Omic Gastrointestinal Cancer Subtype Classification
On inputs to deep learning for RNA 3D structure prediction
Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction
ProtRNA: A Protein-derived RNA Language Model by Cross-Modality Transfer Learning
Re-purposing GNNome: Genome Assembly Postprocessing (GAP)
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant Multiflow
RNAGym: Benchmarks for RNA Fitness and Structure Prediction
RNAlign: Alignment of tumor and cell line transcriptomes using conditional VAEs
scContrast: A contrastive learning based approach for encoding single-cell gene expression data
siRNA-mRNA dual diffusion model for RNAi drug design
SPACE: Your Genomic Profile Predictor is a Powerful DNA Foundation Model
Understanding DNA Discrete Diffusion for Engineering Regulatory DNA Sequences
VirProBERT: A Sequence Language Model for Predicting Viral Hosts
Zero-Shot Extrapolation in State-Space Models for Long-Range Genomics