ICML 2024 Past AI for scienceTheory

ICML'24 Workshop ML for Life and Material Science: From Theory to Industry Applications

ML4LMS

Submission deadline
May 23, 2024, 23:59 UTC
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Submission portal
OpenReview
Notes
Auto-imported from the OpenReview venue record on 2026-06-10 — please verify and enrich (topics are keyword-guessed).

Accepted papers (68)

Fetched from OpenReview (v2) on 2026-06-10.

  1. A Bayesian Approach to Adversarially Robust Life Testing

    Dorina Weichert, Alexander Kister, Sebastian Houben, Gunar Ernis, Tim Wirtz · PDF
  2. A generative foundation model for antibody sequence understanding

    · PDF
  3. A Recipe for Charge Density Prediction

    Xiang Fu, Andrew Scott Rosen, Kyle Bystrom, Rui Wang, Albert Musaelian, Boris Kozinsky, Tess Smidt, Tommi Jaakkola · PDF
  4. AbFlex: Predicting the conformational flexibility of antibody CDRs

    Fabian C Spoendlin, Wing Ki Wong, Guy Georges, Alexander Bujotzek, Charlotte Deane · PDF
  5. Accelerating the inference of string generation-based chemical reaction models for industrial applications

    Mikhail Andronov, Natalia Andronova, Michael Wand, Djork-Arné Clevert, Jürgen Schmidhuber · PDF
  6. Analysis of Atom-level pretraining with QM data for Graph Neural Networks Molecular property models

    Jose Arjona-Medina, Ramil Nugmanov · PDF
  7. Augmenting Evolutionary Models with Structure-based Retrieval

    Yining Huang, Zuobai Zhang, Jian Tang, Debora Susan Marks, Pascal Notin · PDF
  8. Batch-effect invariant graph neural networks for predicting chemotherapy response in triple-negative breast cancer patients

    Asif Khan, Giuseppe Torrisi, Luciana Luque, Claudia Owczarek, Maddy Parsons, Chris Sander, Linus Schumacher · PDF
  9. Benchmarking probabilistic machine learning in protein fitness landscape predictions

    Ningning Chen, Wenkai Han, Sai T. Reddy · PDF
  10. Cell Morphology-Guided Small Molecule Generation with GFlowNets

    Stephen Zhewen Lu, Ziqing Lu, Ehsan Hajiramezanali, Tommaso Biancalani, Yoshua Bengio, Gabriele Scalia, Michał Koziarski · PDF
  11. CellFlows: Inferring Splicing Kinetics from Latent and Mechanistic Cellular Dynamics

    Sei Chang, Zaiqian Chen, Bianca Dumitrascu, David A. Knowles · PDF
  12. Chemical Language Modeling with Structured State Spaces

    Rıza Özçelik, Sarah de Ruiter, Emanuele Criscuolo, Francesca Grisoni · PDF
  13. Closed-Form Test Functions for Biophysical Sequence Optimization Algorithms

    Samuel Don Stanton, Robert G Alberstein, Nathan C. Frey, Andrew Martin Watkins, Kyunghyun Cho · PDF
  14. CodonMPNN for Organism Specific and Codon Optimal Inverse Folding

    Hannes Stark, Umesh Padia, Julia Balla, Cameron Diao · PDF
  15. Combining Graph Attention and Recurrent Neural Networks in a Variational Autoencoder for Molecular Representation Learning and Drug Design

    Alex T. Müller, Kenneth Atz, Michael Reutlinger, Nicolas Zorn · PDF
  16. Constructing artificial life and materials scientists with accelerated AI using Deep AndersoNN

    Saleem Abdul Fattah Ahmed Al Dajani, David Keyes · PDF
  17. Deep Supramolecular Language Processing for Co-crystal Prediction

    Rebecca Birolo, Rıza Özçelik, Andrea Aramini, Michele R. Chierotti, Roberto Gobetto, Francesca Grisoni · PDF
  18. Detecting critical treatment effect bias in small subgroups

    Piersilvio De Bartolomeis, Javier Abad, Konstantin Donhauser, Fanny Yang · PDF
  19. Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path Sampling

    Yuanqi Du, Michael Plainer, Rob Brekelmans, Chenru Duan, Frank Noe, Carla P Gomes, Alan Aspuru-Guzik, Kirill Neklyudov · PDF
  20. DualBind: A Dual-Loss Framework for Protein-Ligand Binding Affinity Prediction

    Meng Liu, Saee Gopal Paliwal · PDF
  21. Energy-Free Guidance of Geometric Diffusion Models for 3D Molecule Inverse Design

    Sanjay Nagaraj, Jiaqi Han, Aksh Garg, Minkai Xu · PDF
  22. Enhancing Multi-Tip Artifact Detection in STM Images Using Fourier Transform and Vision Transformers

    Tommaso Rodani, Alessio ansuini, Alberto Cazzaniga · PDF
  23. Equivariant Flow Matching for Molecular Conformer Generation

    Majdi Hassan, Nikhil Shenoy, Jungyoon Lee, Hannes Stark, Stephan Thaler, Dominique Beaini · PDF
  24. EvoSBDD: Latent Evolution for Accurate and Efficient Structure-Based Drug Design

    Danny Reidenbach · PDF
  25. Exploring sequence landscape of biosynthetic gene clusters with protein language models

    Tatiana Malygina, Olga Kalinina · PDF
  26. Finding Structure-Property Relationships for Molecular Property Predictions with Globally Explainable AI

    Jonas Teufel, Pascal Friederich · PDF
  27. Flexible Docking via Unbalanced Flow Matching

    Gabriele Corso, Vignesh Ram Somnath, Noah Getz, Regina Barzilay, Tommi Jaakkola, Andreas Krause · PDF
  28. FlowBack: A Flow-matching Approach for Generative Backmapping of Macromolecules

    Michael Jones, Smayan Khanna, Andrew Ferguson · PDF
  29. From Laboratory to Everyday Life: Personalized Stress Prediction via Smartwatches

    Batuhan Koyuncu, Aleyna Dilan Kıran, Katja Heilmann, Laith Hamid, Anja Buder, Veronika Engert, Martin Walter, Isabel Valera · PDF
  30. Future-proof vaccine design with a generative model of antibody cross-reactivity

    Noor Youssef, Sarah Gurev, Hannah Rivka Pierce-Hoffman, Alexander A Cohen, Luis F Caldera, Pamela J Bjorkman, Debora Susan Marks · PDF
  31. Gene-centric evaluation of causal variant prediction for DNA models

    Chantriolnt-Andreas Kapourani, Alice Del Vecchio, Agnieszka Dobrowolska, Andrew Anighoro, Edith M. Hessel, Lindsay Edwards, Cristian Regep · PDF
  32. Generalizing Microscopy Image Labeling via Layer-Matching Adversarial Domain Adaptation

    · PDF
  33. Generative acceleration of molecular dynamics simulations for solid-state electrolytes

    Juno Nam, Sulin Liu, Gavin Winter, Rafael Gomez-Bombarelli · PDF
  34. Generative Modeling of Molecular Dynamics Trajectories

    Bowen Jing, Hannes Stark, Tommi Jaakkola, Bonnie Berger · PDF
  35. Graph-Based Retriever Captures the Long Tail of Biomedical Knowledge

    Julien Delile, Srayanta Mukherjee, Anton Van Pamel, Leonid Zhukov · PDF
  36. GraphKAN: Graph Kolmogorov Arnold Network for Small Molecule-Protein Interaction Predictions

    Tashin Ahmed, Md Habibur Rahman Sifat · PDF
  37. Hierarchical Contrastive Learning for Enzyme Function Prediction

    Soorin Yim, Doyeong Hwang, Kiyoung Kim, Sehui Han · PDF
  38. Hyperspectral Unmixing for Raman Spectroscopy via Physics-Constrained Autoencoders

    Dimitar Georgiev, Álvaro Fernández-Galiana, Simon Vilms Pedersen, Georgios Papadopoulos, Ruoxiao Xie, Molly M. Stevens, Mauricio Barahona · PDF
  39. Improving Fragment-Based Deep Molecular Generative Models

    Panukorn Taleongpong, Brooks Paige · PDF
  40. Improving Molecular Modeling with Geometric GNNs: an Empirical Study

    Ali Ramlaoui, Théo Saulus, Basile Terver, Victor Schmidt, David Rolnick, Fragkiskos D. Malliaros, Alexandre AGM Duval · PDF
  41. Improving Performance Prediction of Electrolyte Formulations with Transformer-based Molecular Representation Model

    Indra Priyadarsini, Vidushi Sharma, Seiji Takeda, Akihiro Kishimoto, Lisa Hamada, Hajime Shinohara · PDF
  42. Improving Route Development Using Convergent Retrosynthesis Planning

    Paula Torren-Peraire, Jonas Verhoeven, Dorota Herman, Hugo Ceulemans, Igor V. Tetko, Jörg K. Wegner · PDF
  43. Latent-Guided Equivariant Diffusion for Controlled Structure-Based De Novo Ligand Generation

    Tuan Le, Julian Cremer, Djork-Arné Clevert, Kristof T Schütt · PDF
  44. Likelihood-based fine-tuning of protein language models for few-shot fitness prediction and design

    Alex Hawkins-Hooker, Jakub Kmec, Oliver Bent, Paul Duckworth · PDF
  45. Limitations of scRNA-seq Zero-Imputation Methods for Network Inference

    Ankit Bhardwaj, Joshua Weiner, Preetha Balasubramanian, Lakshmi Subramanian · PDF
  46. Machine learning nominal max oxygen consumption from wearable reflective pulse oximetry with density functional theory

    Saleem Abdul Fattah Ahmed Al Dajani, Frédéric Laquai · PDF
  47. Mirror, Mirror on the Wall: Automating Dental Smile Analysis in Smart Mirrors with CNN and Diffusion Model

    · PDF
  48. Multi-Modal and Multi-Task Transformer for Small Molecule Drug Discovery

    Sai Krishna Sirumalla, David Stephen Farina Jr, Zhuoran Qiao, Daniele Alessandro Di Cesare, Felipe Costas Farias, Michael Bernard O’Connor, Peter John Bygrave, Feizhi Ding, Thomas Dresselhaus, Marcelo Gomes Pereira de Lacerda, Jason Matthew Swails, Daniel Miles, Matthew Welborn, Fred Manby, Thomas Miller · PDF
  49. Multi-Objective Guidance via Importance Sampling for Target-Aware Diffusion-based De Novo Ligand Generation

    Julian Cremer, Tuan Le, Frank Noe, Djork-Arné Clevert, Kristof T Schütt · PDF
  50. Navigating Trustworthiness of Deep Learning in ∆∆G prediction : Addressing Data Bias, Model Evaluation, and Interpretation

    Ruochi Zhang, Ningning Chen, Fengfeng Zhou, Xin Gao · PDF
  51. On the Effectiveness of Quantum Chemistry Pre-training for Pharmacological Property Prediction

    · PDF
  52. Out-of-Distribution Validation for Bioactivity Prediction in Drug Discovery: Lessons from Materials Science

    Udit Surya Saha, Michele Vendruscolo, Anne E Carpenter, Shantanu Singh, Andreas Bender, Srijit Seal · PDF
  53. PLINDER: The protein-ligand interactions dataset and evaluation resource

    Janani Durairaj, Yusuf Adeshina, Zhonglin Cao, Xuejin Zhang, Vladas Oleinikovas, Thomas Duignan, Zachary McClure, Xavier Robin, Emanuele Rossi, Guoqing Zhou, Srimukh Prasad Veccham, Clemens Isert, Yuxing Peng, Prabindh Sundareson, Mehmet Akdel, Gabriele Corso, Hannes Stark, Zachary Wayne Carpenter, Michael M. Bronstein, Emine Kucukbenli, Torsten Schwede, Luca Naef · PDF
  54. PLUTO: Pathology-Universal Transformer

    Dinkar Juyal, Harshith Padigela, Chintan Shah, Daniel Shenker, Natalia Harguindeguy, Yi Liu, Blake Martin, Yibo Zhang, Michael Nercessian, Miles Markey, Isaac Finberg, Kelsey Luu, Daniel Borders, Syed Ashar Javed, Emma Krause, Raymond Biju, Aashish Sood, Allen Ma, Jackson Nyman, John Shamshoian, Guillaume Chhor, Darpan Sanghavi, Marc Thibault, Limin Yu, Fedaa Najdawi, Jennifer A. Hipp, Darren Fahy, Benjamin Glass, Eric Walk, John Abel, Harsha Vardhan pokkalla, Andrew H. Beck, Sean Grullon · PDF
  55. Predicting metal-protein interactions using cofolding methods: Status quo

    Simon L. Dürr, Ursula Rothlisberger · PDF
  56. Protein language models expose viral mimicry and immune escape

    Dan Ofer, Michal Linial · PDF
  57. Protein Language Models in Directed Evolution

    Russell Maguire, Kotryna Bloznelyte, Fikayo Adepoju, Matthew Armean-Jones, Shafiat Dewan, Akash Gupta, Frances Patricia Jones, Preet Lalli, Anna Schooneveld, Sean Thompson, Ece Ebrahimi, Stella Fozzard, David Berman, Luca Rossoni, Will Addison, Ian Taylor · PDF
  58. Quality-Diversity for One-Shot Biological Sequence Design

    Jérémie DONA, Arthur Flajolet, Andrei Marginean, Antoine Cully, Thomas PIERROT · PDF
  59. RamanSPy: Augmenting Raman Spectroscopy Data Analysis with AI

    Dimitar Georgiev, Simon Vilms Pedersen, Ruoxiao Xie, Álvaro Fernández-Galiana, Molly M. Stevens, Mauricio Barahona · PDF
  60. Reducing Uncertainty through Mutual Information in Structural and Systems Biology

    Vincent Zaballa, Elliot E Hui · PDF
  61. RGFN: Synthesizable Molecular Generation Using GFlowNets

    Michał Koziarski, Andrei Rekesh, Dmytro Shevchuk, Almer M. van der Sloot, Piotr Gaiński, Yoshua Bengio, Cheng-Hao Liu, Mike Tyers, Robert A. Batey · PDF
  62. Robustness of Explainable Artificial Intelligence in Industrial Process Modelling

    Benedikt Kantz, Clemens Staudinger, Christoph Feilmayr, Johannes Wachlmayr, Alexander Haberl, Stefan Schuster, Franz Pernkopf · PDF
  63. Scanning Tunneling Microscopy (STM) Image Segmentation Using Unsupervised and Few-shot Learning

    Nikola Kolev, Emily Hofmann, Geoff Thornton, Max Trouton, Filippo Federici, David Gao, Steven Schofield, Taylor Stock, Neil Curson · PDF
  64. Score-Based Generative Models For Binding Peptide Backbones

    · PDF
  65. Scoreformer: A Surrogate Model For Large-Scale Prediction of Docking Scores

    Alvaro Ciudad Serrano, Adrian Morales-Pastor, Laura Malo, Isaac Filella-Merce, VICTOR GUALLAR, Alexis Molina · PDF
  66. Structural activity prediction models recover known binding modes (Poster abstract)

    Michael Backenköhler, Joschka Groß, Paula Linh Kramer, Verena Wolf, Andrea Volkamer · PDF
  67. TAGMol: Target-Aware Gradient-guided Molecule Generation

    Vineeth Dorna, D. Subhalingam, Keshav Kolluru, Shreshth Tuli, Mrityunjay Singh, Saurabh Singal, N M Anoop Krishnan, Sayan Ranu · PDF
  68. Towards Linking Graph Topology to Model Performance for Biomedical Knowledge Graph Completion

    Alberto Cattaneo, Thomas Martynec, Stephen Bonner, Carlo Luschi, Daniel Justus · PDF