NeurIPS 2025 Past AI for science

NeurIPS 2025 AI for Science Workshop

NeurIPS2025-AI4Science

Submission deadline
Aug 28, 2025, 11:59 UTC
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Auto-imported from the OpenReview venue record on 2026-06-10 — please verify and enrich (topics are keyword-guessed).

Accepted papers (230)

Fetched from OpenReview (v2) on 2026-06-10.

  1. 10 Million Particle Events: Enabling Foundation Models for Sparse 3D Inverse Problems

    Omar Alterkait, Sam Young, Ka Vang Tsang, Junjie Xia, Carolyn H Smith, Taritree Wongjirad, Kazuhiro Terao · PDF
  2. A Foundational Dataset for the Predictive Prevention of Waterborne Disease

    Aditya Chaudhary · PDF
  3. A Large Multimodal Molecular Representation Encoder-Decoder Foundation Model for Chemistry

    Victor Y. Shirasuna, Emilio Vital Brazil, Eduardo Soares, Nathaniel H. Park, Dmitry Zubarev, Vidushi Sharma, Indra Priyadarsini, Caio Rodrigues Gama, Enzo Reis de Oliveira · PDF
  4. A Multi-Modal Deep Learning Model for Drug Potency Prediction: Leveraging Features from Physics-Based Docking and Advanced Co-Folding Methods

    Claire Suen, BoRam Lee, Matthew Adrian, Jeffrey Zhou, Hyeyun Jung, David He, Gean Hu, Kelly Hui, Aditi Jain, Qamil Mirza, Milena Novakovic, Joseph Park, Winston Qian, Aarav Shah, Xina Wang, Yunsie Chung, Alan C Cheng · PDF
  5. A Probabilistic U-Net Approach to Downscaling Climate Simulations

    Maryam Alipourhajiagha, Pierre-Louis Lemaire, Youssef Diouane, Julie Carreau · PDF
  6. A study of EHVI vs fixed scalarization for molecule design

    Anabel Yong, Austin Tripp, Layla Hosseini-Gerami, Brooks Paige · PDF
  7. A Synthesizability-Guided Pipeline for Materials Discovery

    Thorben Prein, Willis O'Leary, Aikaterini Flessa Savvidou, Elchaïma Bourneix, Joonatan E. M. Laulainen · PDF
  8. AC-PKAN: Attention-Enhanced and Chebyshev Polynomial-Based Physics-Informed Kolmogorov–Arnold Networks

    Hangwei Zhang, Zhimu Huang, Yan Wang · PDF
  9. Accelerated Isotopologue Reduced Partition Function Ratio Prediction with Orbital-based Deep Learning

    Simon Andren, Beom Seok Kang, William Goddard, John Eiler, Anima Anandkumar · PDF
  10. Accelerating Protein Molecular Dynamics Simulation with DeepJump

    Allan Dos Santos Costa, Manvitha Ponnapati, Dana Rubin, Tess Smidt, JOSEPH JACOBSON · PDF
  11. Adaptive Transition State Refinement with Learned Equilibrium Flows

    Samir Darouich, Vinh Tong, Tanja Bien, Johannes Kästner, Mathias Niepert · PDF
  12. AI for Science Strategic Compass: Aligning Discovery Tensions with Core AI Functions

    Ran Liu, Zhibin Lin, Xiaowei Huang · PDF
  13. AI4O3: A Foundational Data Collection for Artificial Intelligence in Tropospheric Ozone Research

    Makoto Kelp, Sebastian Hickman, Kazuyuki Miyazaki, Kai-Lan Chang, Paul Griffiths, Qindan Zhu, Gerbrand Koren, Fernando Iglesias-Suarez, Elyse Pennington, Martin Georg Schultz · PDF
  14. AIM: Adaptive Intervention for Deep Multi-task Learning of Molecular Properties

    Mason Minot, Gisbert Schneider · PDF
  15. AION-1: Omnimodal Foundation Model for Astronomical Sciences

    Liam Holden Parker, Francois Lanusse, Jeff Shen, Ollie Liu, Tom Hehir, Leopoldo Sarra, Lucas Thibaut Meyer, Micah Bowles, Sebastian Wagner-Carena, Helen Qu, Siavash Golkar, Alberto Bietti, Hatim Bourfoune, Pierre Cornette, Keiya Hirashima, Geraud Krawezik, Ruben Ohana, Nicholas Lourie, Michael McCabe, Rudy Morel, Payel Mukhopadhyay, Mariel Pettee, Kyunghyun Cho, Miles Cranmer, Shirley Ho · PDF
  16. Alvessa: An Agentic Evidence-Grounded Research Assistant for Genomics

    Ksenia Sokolova, Sanketh Vedula, Keerthana Nallamotu, Guillermo Sapiro, Olga G Troyanskaya · PDF
  17. An Agentic Orchestration System for Heliophysics Tasks

    Russell Spiewak, Kevin Lee, James Walsh · PDF
  18. An in-silico integration of neurodevelopmental and dopaminergic views of schizophrenia

    Xena Al-Hejji, Jose Guillermo Gomez Castro, Santina Duarte, Edgar Bermudez Contreras, Eric Chalmers · PDF
  19. Assessing the Geographic Generalization and Physical Consistency of Generative Models for Climate Downscaling

    Carlo Saccardi, Maximilian Pierzyna, Haitz Sáez de Ocáriz Borde, Simone Monaco, Cristian Meo, Pietro Lio, Rudolf Saathof, Geethu Joseph, Justin Dauwels · PDF
  20. Augmenting Research Ideation with Data: An Empirical Investigation in Social Science

    Xiao Liu, Xinyi Dong, Xinyang Gao, Yansong Feng, Xun Pang · PDF
  21. AutoChemSchematic AI: Agentic Physics-Aware Automation for Chemical Manufacturing Scale-Up

    Sagar Srinivas Sakhinana, Shivam Gupta, Venkataramana Runkana · PDF
  22. Automated scientific minimization of regret for cognitive modeling

    Marcel Binz, Akshay Kumar Jagadish, Milena Rmus, Eric Schulz · PDF
  23. BasePrompt: Self-Prompting Genome Language Models for RNA Fitness Prediction

    Jin Gao, Zheling Tan, Junhao Shi, Dequan Wang · PDF
  24. Benchmarking LLMs for atomic-level geometric manipulation in crystals

    Taoyuze Lv, Alexander Chen, Fengyu Xie, Yingheng Wang, Jeffrey Meng, Bram Hoex, Zhicheng Zhong, Tong Xie · PDF
  25. Benchmarking Machine Learning Potentials for Crystal Structure Relaxation

    Kowen Woo, Prashant Govindarajan, Sarath Chandar · PDF
  26. Beyond Atoms: Evaluating Electron Density Representation for 3D Molecular Learning

    Patricia Adriana Suriana, Joshua A Rackers, Ewa Nowara, Pedro O. Pinheiro, Vishnu Sresht, John M Nicoludis · PDF
  27. Beyond data subsampling: differentiation as an uncertainty source in equation discovery

    Khilchuk Maria Denisovna, Ilya Markov, Alexander Hvatov · PDF
  28. Beyond Ensembles: Simulating All-Atom Protein Dynamics in a Learned Latent Space

    Aditya Sengar, Ali Hariri, Pierre Vandergheynst, PATRICK BARTH · PDF
  29. Beyond model organisms: robust prediction of functional properties across protein evolution

    Lucas Waldburger, Hunter Nisonoff, Marissa Zintel, Liam D. Kirkpatrick, Angelica Lam, Nathan Lanclos, Jay D. Keasling, Max V. Staller, Patrick M. Shih · PDF
  30. Bigger is not always better: evaluating target-specific dataset design strategies for regioselectivity prediction on complex molecules

    Jules Schleinitz, Alba Carretero Cerdán, Anjali Gurajapu, Yonatan Harnik, Carolyn Ruan, Gina Lee, Amitesh Pandey, Anat Milo, Sarah Reisman · PDF
  31. BioMedReasoner: Towards Multi-Hop Reasoning using Path-based Relational Learning on Biomedical Knowledge Graphs

    Ahmad Wisnu Mulyadi, Lilija Wehling, Ansh Kumar, Nicolas Boucher, Firas Abdessalem, Sven Jager, Mohammed H. Mosa, Thomas Klabunde, Tommaso Andreani, Gurdeep Singh · PDF
  32. BioVerge: A Comprehensive Benchmark and Study of Self-Evaluating Agents for Biomedical Hypothesis Generation

    Fuyi Yang, Chenchen Ye, Mingyu Derek Ma, Yijia Xiao, Matthew Yang, Wei Wang · PDF
  33. Block-wise distillation for lightweight weather models

    Daniil Sukhorukov, Andrei Zakharov, Dmitry Zhevnenko, Vladimir Kirilin, Ekaterina Muravleva, Ivan Oseledets, Ilya Makarov · PDF
  34. BLOSUM Is All You Learn — Generative Antibody Models Reflect Evolutionary Priors

    Talip Ucar, Pietro Sormanni · PDF
  35. Boundary-Augmented Neural Operators for Better Generalization to Unseen Geometries

    Jiayi Zhou, Valentin Duruisseaux, Daniel Zhengyu Huang, Anima Anandkumar · PDF
  36. Bridging Neural Operator and Flow Matching for a Generative PDE Foundation Model

    Zituo Chen, Sili Deng · PDF
  37. CALM-PDE: Continuous and Adaptive Convolutions for Latent Space Modeling of Time-dependent PDEs

    Jan Hagnberger, Daniel Musekamp, Mathias Niepert · PDF
  38. Can Theoretical Physics Research Benefit from Language Agents?

    Sirui Lu, Zhijing Jin, Terry Jingchen Zhang, Pavel Kos, Juan Ignacio Cirac, Bernhard Schölkopf · PDF
  39. CAST: Causal Modeling of Time-Varying Treatment Effects on Head and Neck Cancer

    Everest Yang, Ria Vasishtha, Luqman K. Dad, Lisa A. Kachnic, Andrew Hope, Eric Wang, Xiao Wu, Yading Yuan, David J Brenner, Igor Shuryak · PDF
  40. Causal AI Scientist: Facilitating Causal Data Science with Large Language Models

    Vishal Verma, Sawal Acharya, Samuel Simko, Devansh Bhardwaj, Anahita Haghighat, Dominik Janzing, Mrinmaya Sachan, Zhijing Jin, Yongjin Yang · PDF
  41. Chemist-aligned retrosynthesis by ensembling diverse inductive bias models

    Krzysztof Maziarz, Guoqing Liu, Austin Tripp, Junren Li, Piotr Gaiński, Marwin Segler · PDF
  42. CHEMSETS: How Capable Are Chemistry LLMs?

    Christoph Bartmann, Mykyta Ielanskyi, Johannes Schimunek, Philipp Seidl, Günter Klambauer, Sohvi Luukkonen · PDF
  43. CiteGuard: Retrieval-Augmented Citation Verification for LLM-Powered Peer Review

    Ishaan Gangwani, Aayam Bansal · PDF
  44. Closing the Omics Gap: A Benchmark for Unified Evaluation of Biomolecular Foundation Models

    Joseph G. Wakim, Vinayak Gupta, Jose Manuel Marti, Jonathan E Allen, Brian R. Bartoldson, Bhavya Kailkhura · PDF
  45. CompGen: A Conditional Generation Framework for Inverse Composition Design of Catalytic Surfaces

    Shuizhou Chen, Chenghan Sun, ZhiyuanLiu, Andi Han, Ichigaku Takigawa, Quan QIAN · PDF
  46. Conditioned Clifford-Steerable Kernels

    Bálint László Szarvas, Maksim Zhdanov · PDF
  47. Connecting Preclinical Models to Patient Outcomes: A Machine Learning Dataset for Predictive Validity in Drug Development

    Alexander Honkala · PDF
  48. Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design

    Danny Reidenbach, Zhonglin Cao, Zuobai Zhang, Kieran Didi, Tomas Geffner, Guoqing Zhou, Jian Tang, Christian Dallago, Arash Vahdat, Emine Kucukbenli, Karsten Kreis · PDF
  49. Constant-Potential Machine Learning Force Field for Electrochemical Interface

    Ruoyu Wang, Shaoheng Fang, Qixing Huang, Yuanyue Liu · PDF
  50. Constructing the Mental Health Phenome: An Open Multimodal Dataset Linking Digital Behavior, Physical Health, and Mental Wellbeing

    Shakson Isaac, Ambika Grover, Yentl Collin, John Torous, Chirag Patel · PDF
  51. Control-Augmented Diffusion for Autoregressive Data Assimilation

    Prakhar Srivastava, Farrin Marouf Sofian, Francesco Immorlano, Stephan Mandt · PDF
  52. Data-Dependent Smoothing for Protein Discovery with Walk-Jump Sampling

    Srinivas Anumasa, Barath Chandran.C, Tingting Chen, Dianbo Liu · PDF
  53. Data-driven Design as a High-Impact, Ecologically Valid Benchmark for Document Understanding

    Sireesh Gururaja, Junwon Seo, Hung-Yi Lin, Jeremiah Milbauer, Anthony Rollett, Emma Strubell · PDF
  54. Data-Driven Solar Surface Flux Transport Modeling with Uncertainty Quantification

    Katherine Keegan, Nina Bonaventura, Plinio Guzmán, Nishu Karna, Shea Hess-Webber, Spiridon Kasapis, Bibhuti Kumar Jha, Andrés Muñoz-Jaramillo · PDF
  55. Data-optimal scaling of paired antibody language models

    Mahdi Shafiei Neyestanak, Sarah M. Burbach, Karenna Ng, Praneeth Gangavarapu, Jonathan Hurtado, Judie Magura, Nasreen Ismail, Daniel Muema, Thumbi Ndung'u, Andrew B. Ward, Bryan Briney · PDF
  56. De novo generation of functional terpene synthases using TpsGPT

    Hamsini Ramanathan, Roman Bushuiev, Matouš Soldát, Jiří Kohout, Téo Hebra, Joshua David Smith, Tomas Pluskal · PDF
  57. Decompose, Adapt, and Evolve: Towards Efficient Scientific Equation Discovery with Large Language Models

    Pouya Behzadifar, Parshin Shojaee, Sanchit Kabra, Kazem Meidani, Chandan K. Reddy · PDF
  58. Deep Graph Learning for Industrial Carbon Emission Analysis and Policy Impact

    Xuanming Zhang · PDF
  59. Demystifying Protein Generation with Hierarchical Conditional Diffusion Models

    Zinan Ling, Yi Shi, Brett A. McKinney, Da Yan, Yang Zhou, Bo Hui · PDF
  60. Differentiable Predictive Control for Precise Oxygen Level Maintenance for Critical Patients

    Azmine Toushik Wasi, Md Manjurul Ahsan · PDF
  61. Diffusion for Fusion: Designing Stellarators with Generative AI

    Misha A Padidar, Ningyuan Huang, Andrew Giuliani, Marina Spivak · PDF
  62. Dimensionality and Topological Stability of Neural Representations in the Human Brain Predict Learning Outcomes

    Junjie Yu, Zihan Deng, Wenxiao Ma, Zhuoli Ouyang, Jianyu Zhang, Yi Guo, Quanying Liu · PDF
  63. DINO: dynamics-informed dataset to overcome the limitations of static molecular data in AI-driven drug discovery

    Eva Smorodina, Victor Greiff, Rahmad Akbar · PDF
  64. Discontinuous Epitope Fragments as Sufficient Target Templates for Efficient Binder Design

    Zhenfeng Deng, Ruijie Hou, Ningrui Xie, Mike Tyers, Michał Koziarski · PDF
  65. Dissecting Larval Zebrafish Hunting Behavior using Deep Reinforcement Learning trained RNNs

    Raaghav Malik, Satpreet Harcharan Singh, Sonja Johnson-Yu, Roy Harpaz, Kanaka Rajan · PDF
  66. DistMLIP: A Distributed Inference Platform for Machine Learning Interatomic Potentials

    Kevin Han, Bowen Deng, Amir Barati Farimani, Gerbrand Ceder · PDF
  67. Diverse Topology Optimization using Modulated Neural Fields

    Andreas Radler, Eric Volkmann, Johannes Brandstetter, Arturs Berzins · PDF
  68. DMPKBench: A Multi-Modal Benchmark for Evaluating LLMs and Agents in Drug Discovery DMPK Tasks‌

    Jie Li, Baiming Chen, Zhiyang Zou, rumin zhang, sheng ding, jinjiang guo · PDF
  69. DMRG Quantum Chemistry Dataset for Multi-Reference Machine Learning

    Stefan Gugler, Nina Glaser · PDF
  70. Do Llamas Understand the Periodic Table?

    Ge Lei, Samuel J. Cooper · PDF
  71. Does LLM dream of differential equation discovery?

    Elizaveta Ivanchik, Timur Bavshin, Alexander Hvatov · PDF
  72. Domain-Invariant Feature Learning for Patient-Level Phenotype Prediction from Single-Cell Data

    Mathias Perez, Justin Hong, Aaron Zweig, Elham Azizi · PDF
  73. EARS-UDE : Evaluating Auditory Response in Sensory Overload with Universal Differential Equations

    Miheer Salunke, Prathamesh Dinesh Joshi, Raj Dandekar, Rajat Dandekar, Sreedath Panat · PDF
  74. Einstein Fields: A Neural Perspective To Computational General Relativity

    Sandeep Suresh Cranganore, Andrei Bodnar, Arturs Berzins, Johannes Brandstetter · PDF
  75. Emergent SO(3)-Invariant Molecular Representations from Multimodal Alignment

    Eduardo Soares, Victor Y. Shirasuna, Emilio Vital Brazil, Dmitry Zubarev, Enzo Reis de Oliveira, Caio Rodrigues Gama, Daniel Djinishian de Briquez · PDF
  76. Empowering AI in RNAi Therapeutics: A Foundational Dataset for siRNA Design and Optimization

    Xin Guo, Jiyang Li · PDF
  77. EquiHGNN: Scalable Rotationally Equivariant Hypergraph Neural Networks

    Tien Dang, Truong-Son Hy · PDF
  78. Every Answer Counts: Enhancing Scientific Discovery with Efficient Entity-Centric Question Answering from Long Contexts

    Binyamin Perets, Zohar Shnaider, Shie Mannor, Dvir Aran · PDF
  79. Explainable AI–Guided Virtual Experiments Reveal How DNA Sequence Context Shapes Gene Regulation

    Sophia Chen, David M. McCandlish, Justin Kinney, Peter K Koo · PDF
  80. Explaining Temporal Effects in Sepsis Prediction

    Chaehyeon Kim, Eric Wong · PDF
  81. Exploring Generative Approaches for Predicting Copolymer Sequences from Reaction Conditions

    Guanghui Min, Wenxin Xu, Kateri DuBay, Chen Chen · PDF
  82. FALCON: An ML Framework for Fully Automated Layout-Constrained Analog Circuit Design

    Asal Mehradfar, Xuzhe Zhao, Yilun Huang, Emir Ceyani, Yankai Yang, Shihao han, Hamidreza Aghasi, Salman Avestimehr · PDF
  83. Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training

    Felix Teufel, Aaron W Kollasch, Yining Huang, Ole Winther, Kevin K Yang, Pascal Notin, Debora Susan Marks · PDF
  84. First Comprehensive Benchmark for Tailored Small Molecule-Binding Aptamer Design

    Mariia Eremeyeva, Nikita Serov · PDF
  85. Foundation Models Enabling Multi-Scale Battery Materials Discovery: From Molecules To Devices

    Vidushi Sharma, Maxwell J Giammona, Andy Tek, Murtaza Zohair, Nathaniel H. Park, Tim Erdmann, Eduardo Soares, Linda Sundberg, Khanh Nguyen, Young-Hye Na, Emilio Vital Brazil · PDF
  86. From In Silico to In Vitro: Evaluating Molecule Generative Models for Hit Generation

    Nagham Osman, Vittorio Lembo, Giovanni Bottegoni, Laura Toni · PDF
  87. From Molecules to Perception: A Benchmark Dataset for AI in Sensory Science

    Dachuan Zhang · PDF
  88. From Static Structures to Ensembles: Studying and Harnessing Protein Structure Tokenization

    Zijing Liu, Bin Feng, He CAO, Yu Li · PDF
  89. GAPMAP: Mapping Scientific Knowledge Gaps in Biomedical Literature Using Large Language Models

    Nourah Salem, Elizabeth White, Mike Bada, Lawrence Hunter · PDF
  90. GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure

    Mahdi Pourmirzaei, Alex Morehead, Farzaneh Esmaili, Jarett Zida Ren, Mohammadreza Pourmirzaeioliaei, Dong Xu · PDF
  91. Generalization Beyond Benchmarks: Evaluating Learnable Protein-Ligand Scoring Functions on Unseen Targets

    Jakub Kopko, David Graber, Saltuk Mustafa Eyrilmez, Stanislav Mazurenko, David Bednar, Jiri Sedlar, Josef Sivic · PDF
  92. Generative AI Enables Medical Image Segmentation in Ultra Low-Data Regimes

    Li Zhang, Basu Jindal, Ahmed Alaa, Robert Weinreb, David Wilson, Eran Segal, James Zou, Pengtao Xie · PDF
  93. Generative Latent Space Dynamics of Electron Density

    Yuan Chiang, Youngsoo Choi, Daniel Osei-Kuffuor · PDF
  94. GeoGraph: Geometric and Graph-based Ensemble Descriptors for Intrinsically Disordered Proteins

    Eoin Quinn, Marco Carobene, Jean Quentin, Sebastien Boyer, Miguel Arbesú, Oliver Bent · PDF
  95. Geometry Aware Inference of Steady State PDEs Using Equivariant Neural Field Representations

    Giovanni Catalani, Xavier BERTRAND, Frédéric TOST, Michael BAUERHEIM, Joseph Morlier · PDF
  96. Gradient-Free Physics-informed Operator Learning using Walk-on-Spheres

    Hrishikesh Viswanath, Hong Chul Nam, Julius Berner, Anima Anandkumar, Aniket Bera · PDF
  97. Graph Neural Networks for Interferometer Simulations

    Sidharth Kannan, Pooyan Goodarzi, Evangelos E. Papalexakis, Jonathan Richardson · PDF
  98. Hash Collisions in Molecular Fingerprints: Effects on Property Prediction and Bayesian Optimization

    Walter Virany, Austin Tripp · PDF
  99. Holonic Science: A New Framework for Benchmarking AI Scientists

    Nathan Suri, Savannah Jennifer Thais · PDF
  100. How knowledge discovery and embedded paradigm transform industrial process management: exploring pipeline hydraulic dynamic identification

    Du Jian, Haochong Li, Jianqin Zheng, Qi Liao, Jun Shen, Shiyuan Pan, Yongtu Liang · PDF
  101. How to Detect and Defeat Molecular Mirage: A Metric-Driven Benchmark for Hallucination in LLM-based Molecular Comprehension

    Li Hao, Liuzhenghao Lv, He CAO, Zijing Liu, Zhiyuan Yan, Yu Wang, Yonghong Tian, Yu Li, Li Yuan · PDF
  102. IM-LPG: Inverse Modeling Approach to Laser Pulse Shape Generation in Inertial Confinement Fusion

    Ricardo Luna Gutierrez, Vineet Gundecha, Rahman Ejaz, Varchas Gopalaswamy, Riccardo Betti, Sahand Ghorbanpour, Aarne Lees, Soumyendu Sarkar · PDF
  103. Improved Therapeutic Antibody Reformatting through Multimodal Machine Learning

    Jiayi Xin, Aniruddh Raghu, Nick Bhattacharya, Adam Carr, Melanie Montgomery, Hunter Elliott · PDF
  104. Improving RNA Secondary Structure Prediction Through Expanded Training Data

    Conner J. Langeberg, Taehan Kim, Roma Nagle, Charlotte Meredith, Dimple Amitha Garuadapuri, Jennifer Doudna, Jamie H. D. Cate · PDF
  105. Is Sequence Information All You Need for Bayesian Optimization of Antibodies?

    Sebastian W. Ober, Calvin McCarter, Aniruddh Raghu, Yucen Lily Li, Alan Nawzad Amin, Andrew Gordon Wilson, Hunter Elliott · PDF
  106. Label-free biochemical imaging of neural organoids via deep learning-enhanced Raman microspectroscopy

    Dimitar Georgiev, Ruoxiao Xie, Daniel Reumann, Xiaoyu Zhao, Álvaro Fernández-Galiana, Mauricio Barahona, Molly M. Stevens · PDF
  107. Large-scale audio-language datasets for bioacoustics

    Gagan Narula, Marius Miron, David Robinson, Milad Alizadeh, Masato Hagiwara, Ellen Gilsenan-McMahon, Sara Keen, Benjamin Hoffman, Maddie Cusimano, Emmanuel Chemla, Matthieu Geist, Olivier Pietquin · PDF
  108. LeafTrackNet: A Deep Learning Framework for Robust Leaf Tracking in Top-Down Plant Phenotyping

    Shanghua Liu, Majharulislam Babor, Christoph Verduyn, Breght Vandenberghe, Bruno Betoni Parodi, Cornelia Weltzien, Marina MC Höhne · PDF
  109. Learning Boltzmann Generators via Constrained Mass Transport

    Christopher von Klitzing, Denis Blessing, Henrik Schopmans, Pascal Friederich, Gerhard Neumann · PDF
  110. Learning chaotic PDEs with boundedness guarantees

    Andrea Goertzen, Sunbochen Tang, Navid Azizan · PDF
  111. Learning Deformable Body Interactions With Adaptive Spatial Tokenization

    Hao Wang, Yu Liu, Daniel Biggs, Haoru Wang, Jiandong Yu, Ping Huang · PDF
  112. Learning Protein-Ligand Binding in Hyperbolic Space

    Jianhui Wang, Wenyu Zhu, Bowen Gao, Xin Hong, Ya-Qin Zhang, Wei-Ying Ma, Yanyan Lan · PDF
  113. Learning to Compress Plasma Turbulence

    Gianluca Galletti, Gerald Gutenbrunner, Fabian Paischer, Sandeep Suresh Cranganore, William Hornsby, Naomi Carey, Lorenzo Zanisi, Stanislas Pamela, Johannes Brandstetter · PDF
  114. LEONARDO: A Physics-Informed Generative Model for Stochastic Nanoparticle Dynamics in Liquid-Phase TEM

    Zain Shabeeb, Vida Jamali · PDF
  115. Leveraging Chemistry Foundation Models to Facilitate Structure Focused Retrieval Augmented Generation in Multi-Agent Workflows for Catalyst and Materials Design

    Nathaniel H. Park, Tiffany Callahan, James L. Hedrick, Tim Erdmann, Sara Capponi · PDF
  116. LINKER: Learning Interactions Between Functional Groups and Residues With Chemical Knowledge-Enhanced Reasoning and Explainability

    Phuc Pham, Viet Thanh Duy Nguyen, Truong-Son Hy · PDF
  117. LLM Kernel: an evaluation framework for open-ended scientific interpretation

    William Connell, Drishti Guin, Clayton Mellina · PDF
  118. Machine Learning Interatomic Potentials: library for efficient training, model development and simulation of molecular systems

    Christoph Brunken, Olivier Peltre, Heloise Chomet, Lucien Walewski, Manus McAuliffe, Valentin Heyraud, Solal Attias, Martin Maarand, Yessine Khanfir, Edan Toledo, Fabio Falcioni, Marie Bluntzer, Silvia Acosta-Gutierrez, Jules Tilly · PDF
  119. MARSHA: Multi-Agent RAG System for Hazard Adaptation

    Yangxinyu Xie, Bowen Jiang, Tanwi Mallick, Joshua Bergerson, John K Hutchison, Duane Rudolph Verner, Jordan Branham, M. Ross Alexander, Robert Ross, Yan Feng, Leslie-Anne Levy, Weijie J Su, Camillo Jose Taylor · PDF
  120. Measuring Dependencies between Biological Signals with Self-supervision, and its Limitations

    Evangelos Sariyanidi, John D Herrington, Lisa D Yankowitz, Pratik Chaudhari, Theodore D. Satterthwaite, Casey J. Zampella, Robert T Schultz, Russell T. Shinohara, Birkan Tunc · PDF
  121. Mechanistic Reaction Data for Interpretable Deep Learning in Chemistry

    Ryan J Miller, Alexander E. Dashuta, Pierre Baldi, David Van Vranken, Ann Marie Carlton · PDF
  122. MEGA: A Large-Scale Molecular Editing Dataset for Guided-Action Optimization

    Nelson Fernandez, Maxime Illouz, Luis Pinto, Entao Yang, Habiboulaye Amadou Boubacar · PDF
  123. Memory-Augmented Reinforcement Learning for Hierarchical Graph Optimization of Dynamic Bills of Materials in Sustainable Medical device Product Families

    Abdelaziz GUELFANE · PDF
  124. MetaOmics-10T: The Foundational Dataset to Unlock Causal Modeling of Microbial Ecosystems

    Arvid E. Gollwitzer, Deepak A. Subramanian, Isaac Tucker, Giovanni Traverso · PDF
  125. Mixture-of-Experts Guided Multi-Omic Integration for Gastrointestinal Cancer Subtype Prediction

    Sajib Acharjee Dip, Uddip Acharjee Shuvo, Dipanwita Mallick, Abrar Rahman Abir, Liqing Zhang · PDF
  126. MLIPAudit: A benchmarking tool for Machine Learned Interatomic Potentials

    Leon Wehrhan, Lucien Walewski, Marie Bluntzer, Heloise Chomet, Christoph Brunken, Jules Tilly, Silvia Acosta-Gutierrez · PDF
  127. Mol-LLaMA: Towards General Understanding of Molecules in Large Molecular Language Model

    Dongki Kim, Wonbin Lee, Sung Ju Hwang · PDF
  128. Mol-LLM: Multimodal Generalist Molecular LLM with Improved Graph Utilization

    Chanhui Lee, Hanbum Ko, Yuheon Song, Yongjun Jeong, Rodrigo Hormazabal, Sehui Han, Kyunghoon Bae, Sungbin Lim, Sungwoong Kim · PDF
  129. Mol-SGCL: Molecular Substructure-Guided Contrastive Learning for Out-of-Distribution Generalization

    Andrew Zhou, Yasha Ektefaie, Maha Farhat · PDF
  130. MOOSE-Chem2: Exploring LLM Limits in Fine-Grained Scientific Hypothesis Discovery \\via Hierarchical Search

    Zonglin Yang, Wanhao Liu, Ben Gao, Yujie Liu, Wei Li, Tong Xie, Lidong Bing, Wanli Ouyang, Erik Cambria, Dongzhan Zhou · PDF
  131. MOOSE-Chem3: Toward Experiment-Guided Hypothesis Ranking via Simulated Experimental Feedback

    Wanhao Liu, Zonglin Yang, Jue Wang, Lidong Bing, Di Zhang, Dongzhan Zhou, Yuqiang Li, Houqiang Li, Erik Cambria, Wanli Ouyang · PDF
  132. moPPIt-v3: Motif-Specific Peptides Generated via Multi-Objective-Guided Discrete Flow Matching

    Tong Chen, Zachary Quinn, Yinuo Zhang, Pranam Chatterjee · PDF
  133. MORGaN: self-supervised multi-relational graph learning for drug target discovery

    Martina Occhetta, Anniek Myatt, Manikhandan A. V. Mudaliar, Conrad Bessant · PDF
  134. MSAFlow: a Unified Approach for MSA Representation, Augmentation, and Family-based Protein Design

    Anirudh Venkatraman, Hanqun Cao, Tong Wei, Chaoran Cheng, Ge Liu · PDF
  135. Multi-Graph Meta-Transformer: An Interpretable Framework for Cross-Graph Functional Alignment in Neural Decoding

    Zahra Moslemi, Ziyi Liang, Norbert J. Fortin, Babak Shahbaba · PDF
  136. Multi-Modal Attention Framework for Underwater Bioacoustic Denoising and Recognition

    Amine Razig, Soulaymani Youssef, Loubna Benabbou, Pierre Cauchy · PDF
  137. Multi-Objective Nanobody Design via Masked Discrete Diffusion with Simplex Refinement

    Ruoxi Zhang, Pranam Chatterjee · PDF
  138. Multi-Objective Peptide Design via Token-Aligned Preference Optimization

    Michaela Areti Zervou, Felix Teufel, Yannis Pantazis, Panagiotis Tsakalides, Ole Winther · PDF
  139. Multi-Scale Classification of Green Bank Telescope Signals

    Jessica E. Liang, Ben Jacobson-Bell, Steve Croft · PDF
  140. Multilevel neural simulation-based inference

    Yuga Hikida, Ayush Bharti, Niall Jeffrey, Francois-Xavier Briol · PDF
  141. Multimodal Large Language Models for Inverse Molecular Design with Retrosynthetic Planning

    Gang Liu, Michael Sun, Wojciech Matusik, Meng Jiang, Jie Chen · PDF
  142. Multiscale Neural PDE Surrogates for Prediction and Downscaling: Application to Ocean Currents

    Abdessamad El Kabid, Loubna Benabbou, Redouane Lguensat, Alex Hernández-García · PDF
  143. Neural network distillation of orbital dependent density functional theory

    Matija Medvidović, Jaylyn C. Umana, Iman Ahmadabadi, Domenico Di Sante, Johannes Flick, Angel Rubio · PDF
  144. Neural Triangular Transport Maps: A New Approach Towards Sampling in Lattice QCD

    Andrey Bryutkin, Youssef Marzouk · PDF
  145. OmniCast: A Masked Latent Diffusion Model for Weather Forecasting Across Time Scales

    Tung Nguyen, Tuan Pham, Troy Arcomano, Rao Kotamarthi, Ian Foster, Sandeep Madireddy, Aditya Grover · PDF
  146. OpenCityCorpus: A Large-Scale, Harmonized, and LLM-Ready Corpus of Urban Data for Scientific Research

    Junfeng Jiao, Sean Hardesty Lewis, Yiming Xu, Jihyung Park, Connor Phillips · PDF
  147. OpenDiscovery: A Verifiable, Creative Science Problem-Solving Dataset to Forge AI Scientists

    Yixuan Weng, QiYao Sun, Minjun Zhu, Yue Zhang · PDF
  148. Pareto-Guided Reinforcement Learning for Multi-Objective ADMET Optimization in Generative Drug Design

    Hoang-My Nguyen, Nguyet-Hang Vu, Hoang Thanh Lam, Hoang D. Nguyen · PDF
  149. PatchDNA: A Flexible and Biologically-Informed Alternative to Tokenization for DNA

    Alice Del Vecchio, Chantriolnt-Andreas Kapourani, Abdullah M Athar, Agnieszka Dobrowolska, Andrew Anighoro, Benjamin Tenmann, Lindsay Edwards, Cristian Regep · PDF
  150. PEAR: Equal Area Weather Forecasting on the Sphere

    Hampus Linander, Christoffer Petersson, Daniel Persson, Jan E Gerken · PDF
  151. PepThink-R1: LLM for Interpretable Cyclic Peptide Optimization with CoT SFT and Reinforcement Learning

    Ruheng Wang, Hang Zhang, Trieu Nguyen, Shasha Feng, Hao-Wei Pang, Xiang Yu, Li Xiao, Peter Zhiping Zhang · PDF
  152. Perovskite-LLM: Knowledge-Enhanced Large Language Models for Perovskite Solar Cell Research

    Xiang Liu, Penglei Sun, Shuyan Chen, Longhan Zhang, Peijie Dong, Huajie You, Yongqi Zhang, Chang YAN, Xiaowen Chu, Tong-yi Zhang · PDF
  153. PhySense: Evaluating LLMs on Foundational Physics Principles

    Yinggan XU, Yue Liu, Zhi-Qiang Gao, Changnan Peng, Di Luo · PDF
  154. Physics-Informed Learning Near Critical Transitions: A Comparative Study of UDEs and Neural ODEs

    Urvi Mahendra Bora, Prathamesh Dinesh Joshi, Raj Dandekar, Rajat Dandekar, Sreedath Panat · PDF
  155. Physics-Informed Neural Networks with Fourier Features and Attention-Driven Decoding

    Rohan Arni, Carlos Blanco · PDF
  156. PhysiX: A Foundation Model for Physics Simulations

    Tung Nguyen, Arsh Koneru, Shufan Li, Aditya Grover · PDF
  157. PICore: Physics-Informed Unsupervised Coreset Selection for Data Efficient Neural Operator Training

    Anirudh Satheesh, Anant Khandelwal, Mucong Ding, Radu Balan · PDF
  158. PIRF: Physics-Informed Reward Fine-Tuning for Diffusion Models

    Mingze Yuan, Pengfei Jin, Na Li, Quanzheng Li · PDF
  159. PKG-DPO: Optimizing Domain-Specific AI systems with Physics Knowledge Graphs and Direct Preference Optimization

    Nitin Nagesh Kulkarni, Bryson Wilcox, Max Sawa, Jason Thom · PDF
  160. PLAME: Lightweight MSA Design Advances Protein Folding From Evolutionary Embeddings

    Hanqun Cao, Xinyi Zhou, Zijun Gao, Chenyu Wang, Xin Gao, Zhi Zhang, Chunbin Gu, Ge Liu, Pheng-Ann Heng · PDF
  161. Predicting Kinase-Specific Phosphorylation Sites with Pretrained Protein Language Models

    Mahdi Pourmirzaei, Farzaneh Esmaili, Kai Chen, Mohammadreza Pourmirzaeioliaei, Mohsen Rezaei, Duolin Wang, Dong Xu · PDF
  162. Predictive Feature Caching for Training-free Acceleration of Molecular Geometry Generation

    Johanna Sommer, John Rachwan, Nils Fleischmann, Stephan Günnemann, Bertrand Charpentier · PDF
  163. PrimerCast: Predictive Modeling of PCR Amplification with an AI-Ready Experimental Dataset

    S. Chan Baek, Kenneth Bryan Hsu, Yasha Ektefaie, Pardis Sabeti · PDF
  164. Proposal for a Large-scale High-quality Dataset of Activity Cliffs

    Xiuyuan Hu, Jingyi Zhao, Guoqing Liu, Yang Zhao, Jieran Li, Hao Zhang, José Miguel Hernández-Lobato · PDF
  165. Protein Design with Agent Rosetta: A Case Study for Specialized Scientific Agents

    Jacopo Teneggi, Tanya Marwah, Alberto Bietti, P. Douglas Renfrew, Vikram Khipple Mulligan, Siavash Golkar · PDF
  166. PUBHOMICS: A Multispecies Biological Dataset to Catalyze AI-Driven Toxicity Assessment for Environmental and Public Health

    Daniel Chinwendu Ukaegbu · PDF
  167. RAG-Enhanced Collaborative LLM Agents for Drug Discovery

    Namkyeong Lee, Edward De Brouwer, Ehsan Hajiramezanali, Tommaso Biancalani, Chanyoung Park, Gabriele Scalia · PDF
  168. Rao-Blackwell Gradient Estimators for Equivariant Denoising Diffusion

    Vinh Tong, Dung Trung Hoang, Anji Liu, Guy Van den Broeck, Mathias Niepert · PDF
  169. ReactionReasoner: Towards Reasoning LLM for Chemical Reaction Prediction

    Hanbum Ko, Chanhui Lee, Ye Rin Kim, Rodrigo Hormazabal, Sehui Han, Sungbin Lim, Sungwoong Kim · PDF
  170. README: Rapid Equation Discovery with Multimodel Encoders

    Gregory Kang Ruey Lau, Yue Ran Kang, Zi-Yu Khoo, Apivich Hemachandra, Ruth Wan Theng Chew, Bryan Kian Hsiang Low · PDF
  171. Reasoning LLMs for Materials Discovery with Physics-aware Rejection Sampling

    Lee Hyun, Sohee Yoon, Jinwoo Park, Jooyeon Ahn, Yebin Jung, You Jung Chung, JINA KIM, Hogeun Chang, Myeonginn Kang, Seongeon Park, Sujin Park, Sue In Chae, Ho-Gyeong Kim, Myeonghun Jeong · PDF
  172. RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

    Zinnia Ma, Neville P. Bethel · PDF
  173. Resilience Outcomes Benchmark: Toward an Outcome-Labeled Coping Strategy Dataset for Precision Mental Health

    Saurabh Anand · PDF
  174. Reviewing Scientific Papers for Critical Problems With Reasoning LLMs: Baseline Approaches and Automatic Evaluation

    Tianmai M. Zhang, Neil F. Abernethy · PDF
  175. Revive Legacy Scientific Reasoning Benchmark by Growing Perturbation

    Terry Jingchen Zhang, Wenyuan Jiang, Yinya Huang · PDF
  176. RNA-Scope: Benchmarking RNA Language Models for RNA Sequence Understanding

    Hui Wang, Wenjun Lin, Hongwang Xiao, Qiwei Ye, Yaqing Zhang · PDF
  177. Rodent-Bench

    Thomas Heap, Laurence Aitchison, Emma Cahill, Adriana Casado Rodriguez · PDF
  178. SafeScientist: Toward Risk-Aware Scientific Discoveries by LLM Agents

    Kunlun Zhu, Jiaxun Zhang, Ziheng Qi, Nuoxing Shang, Zijia Liu, Peixuan Han, Yue Su, Haofei Yu, Jiaxuan You · PDF
  179. Sampling 3D Molecular Conformers with Diffusion Transformers

    Thorben Frank, Winfried Ripken, Gregor Lied, Klaus Robert Muller, Oliver T. Unke, Stefan Chmiela · PDF
  180. Scaling High-Throughput Experimentation Unlocks Robust Reaction-Outcome Prediction

    Michał Sadowski, Lukasz Sztukiewicz, Maria Wyrzykowska, Tadija Radusinović, Piotr Byrski, Paweł Włodarczyk-Pruszyński, Bartosz Matysiak, Jan Kulczycki, Filip Ulatowski, Ruard van Workum, Pawel Dabrowski-Tumanski, Paulina Wach, Filip Chmielewski, Jan Rzymkowski, Mateusz Bruno-Kamiński, Jan Busz, Artur Chołuj, Mateja Duda, Tomasz Dybowski, Marco Farinone, Tomasz Jeliński, Alicja Karczewska, Paweł Kowalczyk, Marek Pietrzak, Łukasz Szczupak, Aleksander Szkółka, Grzegorz Wojciechowski, Stanislaw Kamil Jastrzebski · PDF
  181. Scaling Multi-Modal and Multi-Task Transformers for Small Molecule Drug Discovery

    David S. Farina Jr, Sai Krishna Sirumalla, Michiel J.M. Niesen, Daniele A. Di Cesare, Felipe Costa Farias, Michael B. O'Connor, Marcelo Gomes Pereira de Lacerda, Orion Walker Dollar, Peter Bygrave, Thomas Dresselhaus, Zhuoran Qiao, Rishi Shah, Jason Swails, Daniel Miles, Oliver Feighan, Stephen Opalenski, Wallace Derricotte, Feizhi Ding, Matthew Welborn, Fred Manby, Thomas Miller · PDF
  182. scCMap: Connecting Genetic and Chemical Perturbations at Single-Cell Resolution

    Yiming Li, Min Zeng, Min Li · PDF
  183. Scientific Machine Learning for Symbolic Recovery of Relativistic Effects in Black Hole Orbits

    Pothuraju Naveen Yadav, Prathamesh Dinesh Joshi, Raj Dandekar, Rajat Dandekar, Sreedath Panat, Dinesh Kumar Vishwakarma · PDF
  184. SciKnowEval: A Comprehensive Dataset for Evaluating Scientific Knowledge of Large Language Models

    Kehua Feng, Xinyi Shen, Weijie Wang, Xiang Zhuang, Yuqi Tang, Qiang Zhang, Keyan Ding · PDF
  185. SciNav: A General Agent Framework for Scientific Coding Tasks

    TIANSHU ZHANG, Huan Sun · PDF
  186. Semantic search for 100M+ galaxy images using AI-generated captions

    Nolan Koblischke, Liam Holden Parker, Francois Lanusse, Irina Espejo Morales, Jo Bovy, Shirley Ho · PDF
  187. Sinhala Diachronic Corpus

    Nisansa de Silva · PDF
  188. SkillPuzzler: A Self-Evolving Agentic Framework for Materials and Chemistry Research with Minimal Reliance on Predefined Tools

    Xu Huang, Junwu Chen, Philippe Schwaller, Gerbrand Ceder · PDF
  189. Smiles2Dock: a large-scale dataset for ML-based docking score prediction using AlphaFold structures

    Thomas Le Menestrel, Manuel Rivas Cruz · PDF
  190. Softly Constrained Denoisers for Diffusion Models

    Victor M. Yeom-Song, Severi Rissanen, Arno Solin, Samuel Kaski, Mingfei Sun · PDF
  191. SPADE: Inferring Transcriptional Dynamics from Spatial Transcriptomics with Physics-Informed Deep Learning

    Xiao Wang, Jia Wang, Yuhui Wei, Yijie Wang, Sha Cao, Chi Zhang · PDF
  192. Sparse Autoencoders for Low-$N$ Protein Function Prediction and Design

    Darin Tsui, Kunal Talreja, Amirali Aghazadeh · PDF
  193. Sparse Mixture-of-Experts for Multi-Channel Imaging: Are All Channel Interactions Required?

    Sukwon Yun, Heming Yao, Burkhard Hoeckendorf, David Richmond, Aviv Regev, Russell Littman · PDF
  194. Spatio-Temporal Graphs Beyond Grids: Benchmark for Maritime Anomaly Detection

    Jeehong Kim, Youngseok Hwang, Minchan Kim, Sungho Bae, Hyunwoo Park · PDF
  195. Static and Dynamic Diffusion Emulators: From Sampling Gray Swan Extreme Events to Suffering from Model Collapse

    Karan Jakhar, Pedram Hassanzadeh, Björn Lütjens, Jonathan Weare · PDF
  196. Steering the Evolutionary Game: Hierarchical Control of Therapeutic Resistance in Cancer Treatment

    Arvid E. Gollwitzer, Deepak A. Subramanian, Isaac Tucker, Giovanni Traverso · PDF
  197. Steering Vector Fields for Property-Controlled Molecular Generation with Chemical Language Models

    Aleksandar Dimitrievikj, Jude Wells · PDF
  198. Synergizing Large Language Models and Knowledge Graphs in Science: A Survey

    Zhihui Zhu, Yuqi Tang, Qiang Zhang, Keyan Ding · PDF
  199. SynthFair: A Semi-Synthetic Medical Imaging Dataset to Propel Research on Bias Detection & Mitigation

    Fabio De Sousa Ribeiro, Estanislao Claucich, Emma A.M. Stanley, Panos Dimitrakopoulos, Sotirios A. Tsaftaris, Enzo Ferrante, Ben Glocker, Rodrigo Echeveste · PDF
  200. TadABench-1M: A Large-Scale Wet-Lab Protein Benchmark For Rigorous OOD Evaluation

    Jin Gao, Juntu Zhao, Jiaqi Shen, Junhao Shi, Dukun Zhao, Yuming Lu, Dequan Wang · PDF
  201. Task Alignment Outweighs Framework Choice in Scientific LLM Agents

    Nawaf Alampara, Martiño Ríos-García, Chandan Gupta, Sajid Mannan, Santiago Miret, N M Anoop Krishnan, Kevin Maik Jablonka · PDF
  202. TeBaAb: Text-Based Antigen-Conditioned Antibody Redesign via Directed Evolution

    Cuong Manh Nguyen, Huy-Hoang Do-Huu, Viet Thanh Duy Nguyen, Truong-Son Hy · PDF
  203. Test-Time Control Over Accuracy-Cost Trade-Offs in Neural Physics Simulators via Recurrent Depth

    Harris Abdul Majid, Pietro Sittoni, Francesco Tudisco · PDF
  204. The Darwin–Gödel Discovery Machine: Toward Bounded-Risk Self-Improving AI4Science

    Xuening Wu, Xinhang Zhang, Yanlan Kang, Qianya Xu, Honggang Wang, Zeping Chen · PDF
  205. The Loss Landscape of XRD-Based Structure Optimization Is Too Rough for Gradient Descent

    Nofit Segal, Akshay Subramanian, Mingda Li, Benjamin Kurt Miller, Rafael Gomez-Bombarelli · PDF
  206. The More You Automate, the Less You See: The Hidden Pitfalls of AI Scientist Systems

    Ziming Luo, Atoosa Kasirzadeh, Nihar B Shah · PDF
  207. The Transparent Earth: A Multimodal Foundation Model for the Earth's Subsurface

    Arnab Neelim Mazumder, Javier E. Santos, Noah Hobbs, Mohamed Mehana, Daniel O'Malley · PDF
  208. Thinking like a CHEMIST: Combined Heterogeneous Embedding Model Integrating Structure and Tokens

    Nikolai Rekut, Alexey Orlov, Klea Ziu, Elizaveta Starykh, Martin Takáč, Aleksandr Beznosikov · PDF
  209. Token-Level Early Fusion Model Bridging Text and 3D Electron Density Grids in Chemistry

    Eduardo Soares, Emilio Vital Brazil, Victor Y. Shirasuna, Henrique de Morais Porto, Enzo Reis de Oliveira, Caio Rodrigues Gama, Daniel Djinishian de Briquez, Sandro Rama Fiorini, Marcelo Nery dos Santos, Nathaniel H. Park, Dmitry Zubarev · PDF
  210. Token-Level Guided Discrete Diffusion for Membrane Protein Design

    Shrey Goel, Peregrine Michael Schray, Yinuo Zhang, Sophia Vincoff, Huong T. Kratochvil, Pranam Chatterjee · PDF
  211. Topological defects propagate information in deep neural networks

    Nabil Iqbal, Max Welling · PDF
  212. Topological Feature Compression for Molecular Graph Neural Networks

    Rahul Khorana · PDF
  213. Topological Graph Generative Model for Ecological Design

    Zitong S. Chen, Oana Carja · PDF
  214. TorchQuantumDistributed

    Oliver Knitter, Jonathan Mei, Masako Yamada, Martin Roetteler · PDF
  215. Towards Accurate Test-Time Adaptation for Neural Surrogates

    Anna Zimmel, Gianluca Galletti, Paul Setinek, Johannes Brandstetter, Werner Zellinger · PDF
  216. Towards Generating Stable Materials via Large Language Models with Reinforcement Learning Finetuning

    Zhang-Wei Hong, Nofit Segal, Aviv Netanyahu, Hoje Chun, Rafael Gomez-Bombarelli, Pulkit Agrawal · PDF
  217. Towards Multi-Fidelity Scaling Laws of Neural Surrogates in CFD

    Paul Setinek, Gianluca Galletti, Johannes Brandstetter · PDF
  218. Training Dynamics of Learning 3D-Rotational Equivariance

    Max W Shen, Ewa Nowara, Michael Maser, Kyunghyun Cho · PDF
  219. TroubleRAG: Evaluating Retrieval Pipelines for Real-World Chemistry Troubleshooting

    Mahsa Monshizadeh, Xiaoyi Chen, Haixu Tang, Yuzhen Ye · PDF
  220. Trustworthy Retrosynthesis: Eliminating Hallucinations with a Diverse Ensemble of Reaction Scorers

    Michał Sadowski, Maria Wyrzykowska, Lukasz Sztukiewicz, Tadija Radusinović, Jan Rzymkowski, Paweł Włodarczyk-Pruszyński, Mikołaj Sacha, Piotr Kozakowski, Ruard van Workum, Stanislaw Kamil Jastrzebski · PDF
  221. Unlearning as Ablation: Toward a Falsifiable Benchmark for Generative Scientific Discovery

    Robert Yang · PDF
  222. Urban Climate Counterfactuals: A Causal Dataset for Street-Level Heat Mitigation Interventions

    Ahanaf Hasan Ariq · PDF
  223. Using Deep Reinforcement Learning to Understand Odor Plume Tracking in Walking and Flying Agents

    Aarav Sinha, Satpreet Harcharan Singh · PDF
  224. WhaleLM: Finding Structure and Information in Sperm Whale Vocalizations and Behavior with Machine Learning

    Pratyusha Sharma, Shane Gero, Daniela Rus, Antonio Torralba, Jacob Andreas · PDF
  225. When Do LLMs Improve Bayesian Optimization? A Systematic Comparison Across Molecular and Protein Design

    Mattias Akke, Soojung Yang, Jurģis Ruža, Jinyeop Song, Elton Pan, Rafael Gomez-Bombarelli · PDF
  226. WildSci: Advancing Scientific Reasoning from In-the-Wild Literature

    Tengxiao Liu, Deepak Nathani, Zekun Li, Kevin Yang, William Yang Wang · PDF
  227. Without Safeguards, AI-Biology Integration Risks Accelerating Future Pandemics

    Dianzhuo Wang, Marian Huot, Zechen Zhang, Kaiyi Jiang, Eugene Shakhnovich, Kevin M. Esvelt · PDF
  228. Wrong Model, Right Uncertainty: Spatial Associations for Discrete Data with Misspecification

    David R. Burt, Renato Berlinghieri, Tamara Broderick · PDF
  229. Zephyrus: An Agentic Framework for Weather Science

    Sumanth Varambally, Marshall Fisher, Jas Thakker, Yiwei Chen, Zhirui Xia, Ruijia Niu, Yasaman Jafari, Veeramakali Vignesh Manivannan, Zachary Novack, Luyu Han, Srikar Eranky, Salva Rühling Cachay, Taylor Berg-Kirkpatrick, Duncan Watson-Parris, Yian Ma, Rose Yu · PDF
  230. Zero-Shot Protein–Ligand Binding-Residue Prediction from Sequence and SMILES

    Mahdi Pourmirzaei, Salhuldin Alqarghuli, Kai Chen, Mohammadreza Pourmirzaeioliaei, Dong Xu · PDF