NeurIPS 2025 Past Computer vision

NeurIPS 2025 Workshop for Imageomics: Discovering Biological Knowledge from Images Using AI

NeurIPS 2025 Workshop Imageomics

Submission deadline
Sep 29, 2025, 11:59 UTC
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Auto-imported from the OpenReview venue record on 2026-06-10 — please verify and enrich (topics are keyword-guessed).

Accepted papers (53)

Fetched from OpenReview (v2) on 2026-06-10.

  1. A Machine Learning Framework for Automated Computational Ethology Using Markerless Pose Estimation

    Prateek Verma, Minh-Hao Van, Christopher McEnaney, Amy R. Poe, Xintao Wu · PDF
  2. A multi-modal dataset for insect biodiversity with imagery and DNA at the trap and individual level

    John Quinto, Johanna Orsholm, Brendan Furneaux, Tommi Mononen, Ellen Nein, Tomas Roslin, Iuliia Zarubiieva, Akshita Gupta, Prajakta Darade, Scott C. Lowe, Graham W. Taylor · PDF
  3. A Survey on Computational Pathology Foundation Models

    Dong Li, Guihong Wan, Xintao Wu, Xinyu Wu, Yi He, Zhong Chen, Ninghui Hao, Chen Zhao · PDF
  4. Adapting Pretrained Vision Transformers from 2D to 3D for Cryo-ET Classification

    Yuzhou Wang, Xingjian Li, Min Xu · PDF
  5. Advancing Fluorescence Detection and Ranging in Scattering Media with Mixture-of-Experts and Evidential Critics

    Ismail Erbas, Ferhat Demirkiran, Karthik Swaminathan, Naigang Wang, Navid Ibtehaj Nizam, Nanxue Yuan, Saif Ragab, Luis Chavez, Kaoutar El Maghraoui, Xavier Intes, Vikas Pandey · PDF
  6. Artificial Intelligence for Spatial Transcriptomics: A Scoping Review of Architectures and Models

    Agampreet Saini, Supragya Gandotra, Abhijit Kumar, Pratik Dutta, Tirthankar Ghosal · PDF
  7. BarcodeMamba+: Advancing State-Space Models for Fungal Biodiversity Research

    Tiancheng Gao, Scott C. Lowe, Brendan Furneaux, Angel X Chang, Graham W. Taylor · PDF
  8. BeetleFlow: An Integrative Deep Learning Pipeline for Beetle Image Processing

    Fangxun Liu, S M Rayeed, Samuel Stevens, Alyson East, Cheng Hsuan Chiang, Colin Lee, Daniel Yi, Junke Yang, Tejas Naik, Ziyi Wang, Connor Kilrain, Elijah H Buckwalter, Jiacheng Hou, Saul Ibaven Bueno, Shuheng Wang, Xinyue Ma, Yifan Liu, Zhiyuan Tao, Ziheng Zhang, Eric Sokol, Michael Belitz, Sydne Record, Charles V. Stewart, Wei-Lun Chao · PDF
  9. Benchmarking Parameter Efficient Adaptation of Vision Language Models on Pathology

    Shivam Rajendra Rai Sharma, Xiaoguang Zhu, Luca Cerny Oliveira, Kartik Patwari, La Rissa Vasquez, David Garcia, Louise Nicole C. Sevilla, Brittany N Dugger, Chen-Nee Chuah · PDF
  10. BenthicNet: A global compilation of seafloor images for deep learning applications

    Scott C. Lowe, Benjamin Misiuk, Isaac Xu, Shakhboz Abdulazizov, Amit Robert Baroi, Vicki Ferrini, Ariell Friedman, Deborah R Hart, Daniel Ierodiaconou, Jacquomo Monk, John M. O'Brien, Elizabeth Oh, Luba Y. Reshitnyk, Chris Roelfsema, Jessica A. Sameoto, Alexandre C. G. Schimel, Craig J. Brown, Thomas Trappenberg · PDF
  11. Beyond Conventional Transformers: A Medical X-ray Attention Block for Improved Multi-Label Diagnosis

    Amit Rand, Hadi Ibrahim · PDF
  12. Bi-Encoder Contrastive Learning for Fingerprint and Iris Biometrics

    Matthew So, Judah Goldfeder, Mark Lis, Hod Lipson · PDF
  13. BioBench: A Blueprint to Move Beyond ImageNet for Scientific ML Benchmarks

    Samuel Stevens · PDF
  14. BugSR: Improving Tiny Instance Segmentation on the MassID45 Dataset

    John Quinto, Scott C. Lowe, Akshita Gupta, Johanna Orsholm, Prajakta Darade, Iuliia Zarubiieva, Brendan Furneaux, Tommi Mononen, Tomas Roslin, Graham W. Taylor · PDF
  15. ChannelSFormer: A Channel Agnostic Vision Transformer for Multi-Channel Cell Painting Images

    Jingwei Zhang, Srinivasan Sivanandan · PDF
  16. Coarse-to-Fine 3D MRI Reconstruction via 3D Neural Operators

    Armeet Singh Jatyani, Jiayun Wang, Ryan Y. Lin, Valentin Duruisseaux, Anima Anandkumar · PDF
  17. Compressing Biology: Evaluating the Stable Diffusion VAE for Phenotypic Drug Discovery

    Télio Cropsal, Rocío Mercado · PDF
  18. Continually Adapt or Not (CAN)? A Continual Learning Benchmark of Camera Trap Species Classification over Time

    Sooyoung Jeon, Zheda Mai, Hongjie Tian, Vidhi Bakshi, Lemeng Wang, Jiacheng Hou, Ping Zhang, Arpita Chowdhury, Wei-Lun Chao · PDF
  19. DeepSpot2Cell: Predicting Virtual Single-Cell Spatial Transcriptomics from H&E images using Spot-Level Supervision

    Kalin Nonchev, Glib Manaiev, Viktor Koelzer, Gunnar Ratsch · PDF
  20. DeepTracer Diffusion: A Single‐Stage Diffusion Model for Accurate Cryo-EM Backbone Segmentation

    Nathaniel Jewel, Haydn Tamura, Haowen Guan, Dong Si · PDF
  21. DentalNet: Geometric Aware Multi-View Transformer for Occlusion Grade Prediction in Dental 3D Scans

    Arnesh Batra, Arush Gumber, Vaibhav Sharma, Peemit, Rinkle Sardana, Tulika Tripathi, Anubha Gupta · PDF
  22. Detection in Progress - A Multimodal Segmentation-based Approach for Predicting Glioblastoma Recurrence

    Harshita Kukreja, Nate Tran, Bo Liu, Tracy L Luks, Angela Jakary, Oluwaseun Adegbite, Yan Li, Annette M Molinaro, Javier E Villanueva-Meyer, Steve E Braunstein, Hui Lin, Janine Lupo · PDF
  23. Distortion-Free Registration of Whole-Slide Images via Tile-Based Refinement

    Sungyun Kim, Sehoon Kim, Dong Gyun Kang, Jae Eun Song, Kwangsoo Kim, Eun Na Kim · PDF
  24. Embedding cell state dynamics via contrastive learning of representations of 3D dynamic imaging datasets

    Eduardo Hirata-Miyasaki, Soorya Pradeep, Ziwen Liu, Alishba Imran, Taylla Milena Theodoro, Ivan E. Ivanov, Sudip Khadka, See-Chi Lee, Michelle E Grunberg, Hunter Woosley, Madhura Bhave, Carolina Arias, Shalin B. Mehta · PDF
  25. Evaluating the Utility of Sparse Autoencoders for Interpreting a Pathology Foundation Model

    Nhat Minh Le, Ciyue Shen, Neel Patel, Chintan Shah, Darpan Sanghavi, Blake Martin, Alfred Eng, Harshith Padigela, Raymond Biju, Sean Grullon, Dinkar Juyal, Syed Ashar Javed · PDF
  26. Exploring simulators for particle picking in cryo-electron tomography

    Serena Maria Arghittu, Lars Dingeldein, Geoffrey Woollard, Lingli Kong, Magnus Petersen, Sonya M Hanson, Roberto Covino, Pilar Cossio · PDF
  27. FaceTTD: Time-to-Death from Imageomic Facial Time Series for Rapid Mortality Risk Profiling and Longevity Interventions

    Saleem Abdul Fattah Ahmed Al Dajani, Dmitrii Glubokov, Alexander Tyshkovskiy, John R Williams, Jesse R. Poganik, Omar Abudayyeh, Jonathan S. Gootenberg, Vadim N. Gladyshev · PDF
  28. From Pixels to Pregnancies: AI-Driven Oocyte Grading for Scalable Livestock Breeding

    Parkash Singh, Grace Koppelman, Tanya Berger-Wolf, John Patrick Fulton · PDF
  29. Geometric Shape Matching for Explainable and Accurate Medical Image Segmentation: A Post-Processing Refinement Framework

    Ruhaib Muhammad, Shivaram V, Jey Praveen Sivaraj, Dhiraj Gambhire, Lakshmi Subramanian · PDF
  30. Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution

    Mridul Khurana, Arka Daw, M. Maruf, Josef Uyeda, Wasila Dahdul, Caleb Patrick Charpentier, Yasin Bakis, Henry Bart, Paula Mabee, Hilmar Lapp, James Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Berger-Wolf, Anuj Karpatne · PDF
  31. Hybrid Diffusion Model for Breast Ultrasound Image Augmentation

    Farhan Fuad Abir, Sanjeda Sara Jennifer, Niloofar Yousefi, Laura Brattain · PDF
  32. Hyperbolic Few-Shot Learning for Taxonomic Plant Classification

    Mithil Shah · PDF
  33. Hyperbolic Multimodal Representation Learning for Biological Taxonomies

    ZeMing Gong, Chuanqi Tang, Xiaoliang Huo, Nicholas Pellegrino, Austin Wang, Graham W. Taylor, Angel X Chang, Scott C. Lowe, Joakim Bruslund Haurum · PDF
  34. Investigating dynamics of Neural Cellular Automata applied to image data in diverse complex systems

    Vaibhav Mahajan, Soumya Banerjee · PDF
  35. L$^3$Seg: $\underline{\mathrm{L}}$ean $\underline{\mathrm{L}}$inear $\underline{\mathrm{L}}$ayers for Language-Guided Vision Transformer in Medical Image Segmentation

    Rahul Bhardwaj, Utkarsh Yashwant Tambe, Debanga Raj Neog · PDF
  36. Label-free biochemical imaging of neural organoids via deep learning-enhanced Raman microspectroscopy

    Dimitar Georgiev · PDF
  37. Leveraging Model-Generated Annotations for Nuclei Segmentation in Computational Pathology

    Christopher Hendra, Charlene Zhi Lin Ong, Asad Abu Bakar Ali, Desiree Abdurrachim, Shubing Wang, richard baumgartner, Kelvin Kian Long Chong, Chih-Liang Chin Chin, Michelle Ngo · PDF
  38. Mapping Cell Morphology to a Standard Coordinate System for Analyzing Dynamic Cell Signaling

    Shiqiu Yu, Gaudenz Danuser, Felix Yuran Zhou · PDF
  39. MATCH: Multi-faceted Adaptive Topo-Consistency for Semi-Supervised Histopathology Segmentation

    Meilong Xu, Xiaoling Hu, Shahira Abousamra, Chen Li, Chao Chen · PDF
  40. Mind the (Data) Gap: Evaluating Vision Systems in Small Data Applications

    Samuel Stevens, S M Rayeed, Jenna Marie Kline · PDF
  41. Novel Finetuning Strategies for Adapting Biomedical Vision Language Models to Organ-Centered Pathology Microscopy Tasks

    Siddharth Venkatesh, Benjamin Liu, Ayman Sheikh, Anne Essien Essien, Pratibh, Rayhan Roswendi, Jeremiah Zhang, Kevin Zhu, Sunishchal Dev · PDF
  42. On Thin Ice: Towards Explainable Conservation Monitoring via Attribution and Perturbations

    Jiayi Zhou, Gunel Aghakishiyeva, Saagar Arya, Julian Dale, James David Poling, Holly R. Houliston, Jamie N. Womble, Gregory D Larsen, David W. Johnston, Brinnae Bent · PDF
  43. Photorealistic Inpainting for Perturbation-based Explanations in Ecological Monitoring

    Gunel Aghakishiyeva, Jiayi Zhou, Saagar Arya, Julian Dale, James David Poling, Holly R. Houliston, Jamie N. Womble, Gregory D Larsen, David W. Johnston, Brinnae Bent · PDF
  44. Probing the lighting sensitivity of image encoders with repeat drone imagery: A case study of plant height estimation

    Kyle Doherty, Max A Gurinas, Brandon Trabucco, Ruslan Salakhutdinov · PDF
  45. ProteinPNet: Prototypical Part Networks for Concept Learning in Spatial Proteomics

    Louis McConnell, Jieran Sun, Theo Maffei, Raphael Gottardo, Marianna Rapsomaniki · PDF
  46. Saliency Guided Longitudinal Medical Visual Question Answering

    Jialin Wu, Xiaofeng Liu · PDF
  47. Scalable Rigid-Invariant Distance for Shape Matching and Alignment

    Zakk Heile, Peilin He, Jayson Tran, Ruiling Wang, Shrikant Chand · PDF
  48. Simulation-based inference of yeast centromeres

    Eloïse Touron, Pedro L. C. Rodrigues, Julyan Arbel, Nelle Varoquaux, Michael Arbel · PDF
  49. SmartWilds: Multimodal Wildlife Monitoring Dataset

    Jenna Marie Kline, Anirudh Potlapally, Tanishka Wani, Vedant Yuvraj Patil, Penelope Covey, Rugved Katole, Samuel Stevens, Hari Subramoni, Tanya Berger-Wolf, Christopher Stewart · PDF
  50. Structural MRI–Informed Multimodal Fusion for Robust Alzheimer’s Disease Prediction

    Juhyun Lee, Sungjoon Park, Kyungwook Lee, Soorin Yim, Doyeong Hwang, Dongyun Kim, Kiwoong Yoo, Soonyoung Lee, Kiyoung Kim · PDF
  51. Toward Generalizable Whole Brain Representations with High-Resolution Light-Sheet Data

    Minyoung E. Kim, Dae Hee Yun, Aditi V Patel, Madeline Hon, Taegeon Lee, Webster Guan, Brian Nguyen · PDF
  52. Trait2Vec: Ontology-aware embeddings for organismal trait descriptions

    Juan Jose Garcia, James Balhoff, Hilmar Lapp · PDF
  53. Vision Transformer Autoencoders for Unsupervised Representation Learning: Revealing Novel Genetic Associations through Learned Sparse Attention Patterns

    Samia Islam, Tian Xia, Ziqian Xie, Degui Zhi · PDF